List of bioinformatics software

The list of bioinformatics software tools can be split up according to the license used:

• List of proprietary bioinformatics software
• List of open-source bioinformatics software

Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on:

• Sequence analysis software
• List of sequence alignment software
• List of alignment visualization software
• Alignment-free sequence analysis
• De novo sequence assemblers
• List of gene prediction software
• List of disorder prediction software
• List of Protein subcellular localization prediction tools
• List of phylogenetics software
• List of phylogenetic tree visualization software
• Structural biology software
• List of molecular graphics systems
• List of protein-ligand docking software
• List of RNA structure prediction software
• List of software for protein model error verification
• List of systems biology modeling software
• List of protein secondary structure prediction programs
• List of protein structure prediction software
• Structural alignment software
• Other
• Compression of genomic sequencing data
• Bioinformatics workflow management system
• List of biomedical cybernetics software
• List of genetic engineering software
• List of systems biology visualization software
• List of systems biology modelling software
• 2D gel analysis software
• List of mass spectrometry software