The 2006 Cork Junior A Football Championship was the 108th staging of the Cork Junior A Football Championship since its establishment by Cork County Board in 1895. The championship ran from 8 October to 19 November 2006.
The final was played on 19 November 2006 at Páirc UàRinn in Cork, between Adrigole and Grenagh, in what was their first ever meeting in the final. Adrigole won the match by 0âÂÂ05 to 0âÂÂ03 to claim their first ever championship title.