Stojan Ignatov (; born 22 December 1979) is a Macedonian retired football midfielder.
He finished his career at FK Teteks. He played for Ethnikos Achna FC in Cyprus.
He made his senior debut for Macedonia in a July 2001 friendly match against Qatar and has earned a total of 11 caps, scoring no goals. His final international was a September 2005 FIFA World Cup qualification match against Finland.