This is a list of native amphibians in Indonesia.
- Family: Bombinatoridae Gray, 1825
- Genus: Barbourula Taylor and Noble, 1924
- Barbourula kalimantanensis Iskandar, 1978
- Family: Bufonidae Gray, 1825
- Genus: Ansonia Stoliczka, 1870
- Ansonia albomaculata Inger, 1960
- Ansonia glandulosa Iskandar and Mumpuni, 2004
- Ansonia hanitschi Inger, 1960
- Ansonia latidisca Inger, 1966
- Ansonia leptopus (Günther, 1872)
- Ansonia longidigita Inger, 1960
- Ansonia minuta Inger, 1960
- Ansonia spinulifer (Mocquard, 1890)
- Genus: Duttaphrynus Frost, Grant, Faivovich, Bain, Haas, Haddad, de Sá, Channing, Wilkinson, Donnellan, Raxworthy, Campbell, Blotto, Moler, Drewes, Nussbaum, Lynch, Green, and Wheeler, 2006
- Duttaphrynus melanostictus (Schneider, 1799)
- Duttaphrynus sumatranus (Peters, 1871)
- Duttaphrynus totol (Ohler, 2010)
- Duttaphrynus valhallae (Meade-Waldo, 1909)
- Genus: Ingerophrynus Frost, Grant, Faivovich, Bain, Haas, Haddad, de Sá, Channing, Wilkinson, Donnellan, Raxworthy, Campbell, Blotto, Moler, Drewes, Nussbaum, Lynch, Green, and Wheeler, 2006
- Ingerophrynus biporcatus (Gravenhorst, 1829)
- Ingerophrynus celebensis (Günther, 1859)
- Ingerophrynus claviger (Peters, 1863)
- Ingerophrynus divergens (Peters, 1871)
- Ingerophrynus parvus (Boulenger, 1887)
- Ingerophrynus quadriporcatus (Boulenger, 1887)
- Genus: Leptophryne Fitzinger, 1843
- Leptophryne borbonica (Tschudi, 1838)
- Leptophryne cruentata (Tschudi, 1838)
- Genus: Pelophryne Barbour, 1938
- Pelophryne guentheri (Boulenger, 1882)
- Pelophryne rhopophilia Inger and Stuebing, 1996
- Pelophryne signata (Boulenger, 1895)
- Genus: Phrynoidis Fitzinger in Treitschke, 1842
- Phrynoidis asper (Gravenhorst, 1829)
- Phrynoidis juxtasper (Inger, 1964)
- Genus: Pseudobufo Tschudi, 1838
- Pseudobufo subasper Tschudi, 1838
- Genus: Rentapia Chan, Grismer, Zachariah, Brown, and Abraham, 2016
- Rentapia hosii (Boulenger, 1892)
- Genus: Rhinella Fitzinger, 1826
- Rhinella marina (Linnaeus, 1758)
- Genus: Sabahphrynus Matsui, Yambun, and Sudin, 2007
- Sabahphrynus maculatus (Mocquard, 1890)
- Genus: Sigalegalephrynus
- Sigalegalephrynus mandailinguensis Smart, Sarker, Arifin, Harvey, Sidik, Hamidy, Kurniawan, and Smith, 2017
- Sigalegalephrynus minangkabauensis Smart, Sarker, Arifin, Harvey, Sidik, Hamidy, Kurniawan, and Smith, 2017
- Sigalegalephrynus burnitelonensis Sarker, Wostl, Thammachoti, Sidik, Hamidy, Kurniawan, and Smith, 2019
- Sigalegalephrynus gayoluesensis Sarker, Wostl, Thammachoti, Sidik, Hamidy, Kurniawan, and Smith, 2019
- Sigalegalephrynus harveyi Sarker, Wostl, Thammachoti, Sidik, Hamidy, Kurniawan, and Smith, 2019
- Family: Ceratobatrachidae Boulenger, 1884
- Subfamily: Alcalinae Brown, Siler, Richards, Diesmos, and Cannatella, 2015
- Genus: Alcalus Brown, Siler, Richards, Diesmos, and Cannatella, 2015
- Alcalus baluensis (Boulenger, 1896)
- Alcalus rajae (Iskandar, Bickford, and Arifin, 2011)
- Subfamily: Ceratobatrachinae Boulenger, 1884
- Genus: Cornufer Tschudi, 1838
- Cornufer batantae (Zweifel, 1969)
- Cornufer bimaculatus (Günther, 1999)
- Cornufer cheesmanae (Parker, 1940)
- Cornufer cryptotis (Günther, 1999)
- Cornufer paepkei (Günther, 2015)
- Cornufer papuensis (Meyer, 1875)
- Cornufer punctatus (Peters and Doria, 1878)
- Cornufer wuenscheorum (Günther, 2006)
- Family: Dicroglossidae Anderson, 1871
- Subfamily: Dicroglossinae Anderson, 1871
- Genus: Fejervarya Bolkay, 1915
- Fejervarya cancrivora (Gravenhorst, 1829)
- Fejervarya iskandari Veith, Kosuch, Ohler, and Dubois, 2001
- Fejervarya limnocharis (Gravenhorst, 1829)
- Fejervarya schlueteri (Werner, 1893)
- Fejervarya verruculosa (Roux, 1911)
- Genus: Limnonectes Fitzinger, 1843
- Limnonectes arathooni (Smith, 1927)
- Limnonectes asperatus (Inger, Boeadi, and Taufik, 1996)
- Limnonectes blythii (Boulenger, 1920)
- Limnonectes dammermani (Mertens, 1929)
- Limnonectes finchi (Inger, 1966)
- Limnonectes grunniens (Latreille, 1801)
- Limnonectes heinrichi (Ahl, 1933)
- Limnonectes hikidai Matsui and Nishikawa, 2014
- Limnonectes ibanorum (Inger, 1964)
- Limnonectes ingeri (Kiew, 1978)
- Limnonectes kadarsani Iskandar, Boeadi, and Sancoyo, 1996
- Limnonectes kenepaiensis (Inger, 1966)
- Limnonectes khasianus (Anderson, 1871)
- Limnonectes kong Dehling and Dehling, 2017
- Limnonectes kuhlii (Tschudi, 1838)
- Limnonectes larvaepartus Iskandar, Evans, and McGuire, 2014
- Limnonectes leporinus Andersson, 1923
- Limnonectes macrodon (Duméril and Bibron, 1841)
- Limnonectes macrognathus (Boulenger, 1917)
- Limnonectes malesianus (Kiew, 1984)
- Limnonectes microdiscus (Boettger, 1892)
- Limnonectes microtympanum (Van Kampen, 1907)
- Limnonectes modestus (Boulenger, 1882)
- Limnonectes palavanensis (Boulenger, 1894)
- Limnonectes paramacrodon (Inger, 1966)
- Limnonectes rhacodus (Inger, Boeadi, and Taufik, 1996)
- Limnonectes shompenorum Das, 1996
- Limnonectes sinuatodorsalis Matsui, 2015
- Limnonectes sisikdagu McLeod, Horner, Husted, Barley, and Iskandar, 2011
- Limnonectes timorensis (Smith, 1927)
- Limnonectes tweediei (Smith, 1935)
- Subfamily: Occidozyginae Fei, Ye, and Huang, 1990
- Genus: Occidozyga Kuhl and Van Hasselt, 1822
- Occidozyga baluensis (Boulenger, 1896)
- Occidozyga celebensis Smith, 1927
- Occidozyga floresiana Mertens, 1927
- Occidozyga lima (Gravenhorst, 1829)
- Occidozyga semipalmata Smith, 1927
- Occidozyga sumatrana (Peters, 1877)
- Occidozyga tompotika Iskandar, Arifin, and Rachmanasah, 2011
- Family: Hylidae Rafinesque, 1815
- Family: Megophryidae Bonaparte, 1850
- Genus: Leptobrachella Smith, 1925
- Leptobrachella baluensis Smith, 1931
- Leptobrachella dringi (Dubois, 1987)
- Leptobrachella gracilis (Günther, 1872)
- Leptobrachella hamidi (Matsui, 1997)
- Leptobrachella juliandringi Eto, Matsui, and Nishikawa, 2015
- Leptobrachella mjobergi Smith, 1925
- Leptobrachella natunae (Günther, 1895)
- Leptobrachella picta (Malkmus, 1992)
- Leptobrachella serasanae Dring, 1983
- Genus: Leptobrachium Tschudi, 1838
- Leptobrachium abbotti (Cochran, 1926)
- Leptobrachium hasseltii Tschudi, 1838
- Leptobrachium hendricksoni Taylor, 1962
- Leptobrachium ingeri Hamidy, Matsui, Nishikawa, and Belabut, 2012
- Leptobrachium montanum Fischer, 1885
- Leptobrachium waysepuntiense Hamidy and Matsui, 2010
- Genus: Megophrys Kuhl and Van Hasselt, 1822
- Megophrys baluensis (Boulenger, 1899)
- Megophrys edwardinae Inger, 1989
- Megophrys montana (Kuhl and Van Hasselt, 1822)
- Megophrys nasuta (Schlegel, 1858)
- Megophrys parallela Inger and Iskandar, 2005
- Family: Microhylidae Günther, 1858 (1843)
- Subfamily: Asterophryinae Günther, 1858
- Genus: Aphantophryne
- Aphantophryne parkeri (Loveridge, 1955)
- Genus: Asterophrys Tschudi, 1838
- Asterophrys eurydactyla (Zweifel, 1972)
- Asterophrys foja (Günther, Richards, and Tjaturadi, 2016)
- Asterophrys leucopus Richards, Johnston, and Burton, 1994
- Asterophrys marani (Günther, 2009)
- Asterophrys pullifer (Günther, 2006)
- Asterophrys slateri Loveridge, 1955
- Asterophrys turpicola (Schlegel, 1837)
- Genus: Austrochaperina Fry, 1912
- Austrochaperina basipalmata (Van Kampen, 1906)
- Austrochaperina blumi Zweifel, 2000
- Austrochaperina kosarek Zweifel, 2000
- Austrochaperina macrorhyncha (Van Kampen, 1906)
- Austrochaperina minutissima Günther, 2009
- Austrochaperina punctata (Van Kampen, 1913)
- Austrochaperina rudolfarndti Günther, 2017
- Genus: Barygenys Parker, 1936
- Genus: Callulops Boulenger, 1888
- Callulops biakensis Günther, Stelbrink, and von Rintelen, 2012
- Callulops boettgeri (Méhely, 1901)
- Callulops dubius (Boettger, 1895)
- Callulops fojaensis Oliver, Richards, and Tjaturadi, 2012
- Callulops fuscus (Peters, 1867)
- Callulops kampeni (Boulenger, 1914)
- Callulops kopsteini (Mertens, 1930)
- Callulops valvifer (Barbour, 1910)
- Callulops wondiwoiensis Günther, Stelbrink, and von Rintelen, 2012
- Callulops yapenensis Günther, Stelbrink, and von Rintelen, 2012
- Genus: Choerophryne Van Kampen, 1914
- Choerophryne amomani Günther, 2008
- Choerophryne arndtorum Günther, 2008
- Choerophryne laurini (Günther, 2000)
- Choerophryne microps Günther, 2008
- Choerophryne nigrescens Günther, 2008
- Choerophryne proboscidea Van Kampen, 1914
- Choerophryne rostellifer (Wandolleck, 1911)
- Choerophryne tubercula (Richards, Johnston, and Burton, 1992)
- Choerophryne variegata (Van Kampen, 1923)
- Genus: Cophixalus Boettger, 1892
- Cophixalus balbus Günther, 2003
- Cophixalus biroi (Méhely, 1901)
- Cophixalus cheesmanae Parker, 1934
- Cophixalus humicola Günther, 2006
- Cophixalus monosyllabus Günther, 2010
- Cophixalus montanus (Boettger, 1895)
- Cophixalus pictus Kraus, 2012
- Cophixalus rajampatensis Günther, Richards, Tjaturadi, and Krey, 2015
- Cophixalus salawatiensis Günther, Richards, Tjaturadi, and Krey, 2015
- Cophixalus tetzlaffi Günther, 2003
- Cophixalus tridactylus Günther, 2006
- Genus: Copiula Méhely, 1901
- Copiula derongo (Zweifel, 2000)
- Copiula exspectata Günther, 2002
- Copiula major Günther, 2002
- Copiula obsti Günther, 2002
- Copiula pipiens Burton and Stocks, 1986
- Genus: Gastrophrynoides Noble, 1926
- Gastrophrynoides borneensis (Boulenger, 1897)
- Genus: Hylophorbus Macleay, 1878
- Hylophorbus nigrinus Günther, 2001
- Hylophorbus picoides Günther, 2001
- Hylophorbus rufescens Macleay, 1878
- Hylophorbus sextus Günther, 2001
- Hylophorbus tetraphonus Günther, 2001
- Hylophorbus wondiwoi Günther, 2001
- Genus: Mantophryne Boulenger, 1897
- Mantophryne lateralis Boulenger, 1897
- Genus: Oninia Günther, Stelbrink, and von Rintelen, 2010
- Oninia senglaubi Günther, Stelbrink, and von Rintelen, 2010
- Genus: Oreophryne Boettger, 1895
- Oreophryne albopunctata (Van Kampen, 1909)
- Oreophryne alticola Zweifel, Cogger, and Richards, 2005
- Oreophryne asplenicola Günther, 2003
- Oreophryne atrigularis Günther, Richards, and Iskandar, 2001
- Oreophryne biroi (Méhely, 1897)
- Oreophryne brevicrus Zweifel, 1956
- Oreophryne brevirostris Zweifel, Cogger, and Richards, 2005
- Oreophryne celebensis (Müller, 1894)
- Oreophryne choerophrynoides Günther, 2015
- Oreophryne clamata Günther, 2003
- Oreophryne crucifer (Van Kampen, 1913)
- Oreophryne flava Parker, 1934
- Oreophryne frontifasciata (Horst, 1883)
- Oreophryne furu Günther, Richards, Tjaturadi, and Iskandar, 2009
- Oreophryne habbemensis Zweifel, Cogger, and Richards, 2005
- Oreophryne idenburgensis Zweifel, 1956
- Oreophryne jeffersoniana Dunn, 1928
- Oreophryne kapisa Günther, 2003
- Oreophryne mertoni (Roux, 1910)
- Oreophryne minuta Richards and Iskandar, 2000
- Oreophryne moluccensis (Peters and Doria, 1878)
- Oreophryne monticola (Boulenger, 1897)
- Oreophryne oviprotector Günther, Richards, Bickford, and Johnston, 2012
- Oreophryne pseudasplenicola Günther, 2003
- Oreophryne roedeli Günther, 2015
- Oreophryne rookmaakeri Mertens, 1927
- Oreophryne sibilans Günther, 2003
- Oreophryne terrestris Zweifel, Cogger, and Richards, 2005
- Oreophryne unicolor Günther, 2003
- Oreophryne variabilis (Boulenger, 1896)
- Oreophryne waira Günther, 2003
- Oreophryne wapoga Günther, Richards, and Iskandar, 2001
- Oreophryne wolterstorffi (Werner, 1901)
- Oreophryne zimmeri Ahl, 1933
- Genus: Sphenophryne Peters and Doria, 1878
- Sphenophryne brevicrus (Van Kampen, 1913)
- Sphenophryne cornuta Peters and Doria, 1878
- Sphenophryne schlaginhaufeni Wandolleck, 1911
- Genus: Xenorhina Peters, 1863
- Xenorhina adisca Kraus and Allison, 2003
- Xenorhina anorbis (Blum and Menzies, 1989)
- Xenorhina arfakiana (Blum and Menzies, 1989)
- Xenorhina arndti Günther, 2010
- Xenorhina bidens Van Kampen, 1909
- Xenorhina bouwensi (De Witte, 1930)
- Xenorhina eiponis Blum and Menzies, 1989
- Xenorhina fuscigula (Blum and Menzies, 1989)
- Xenorhina gigantea Van Kampen, 1915
- Xenorhina lanthanites (Günther and Knop, 2006)
- Xenorhina macrodisca Günther and Richards, 2005
- Xenorhina macrops Van Kampen, 1913
- Xenorhina mehelyi (Boulenger, 1898)
- Xenorhina minima (Parker, 1934)
- Xenorhina multisica (Blum and Menzies, 1989)
- Xenorhina obesa (Zweifel, 1960)
- Xenorhina ocellata Van Kampen, 1913
- Xenorhina ophiodon (Peters and Doria, 1878)
- Xenorhina oxycephala (Schlegel, 1858)
- Xenorhina parkerorum Zweifel, 1972
- Xenorhina rostrata (Méhely, 1898)
- Xenorhina scheepstrai (Blum and Menzies, 1989)
- Xenorhina schiefenhoeveli (Blum and Menzies, 1989)
- Xenorhina similis (Zweifel, 1956)
- Xenorhina varia Günther and Richards, 2005
- Subfamily: Chaperininae Peloso, Frost, Richards, Rodrigues, Donnellan, Matsui, Raxworthy, Biju, Lemmon, Lemmon, and Wheeler, 2016
- Genus: Chaperina Mocquard, 1892
- Chaperina fusca Mocquard, 1892
- Subfamily: Kalophryninae Mivart, 1869
- Genus: Kalophrynus Tschudi, 1838
- Kalophrynus bunguranus (Günther, 1895)
- Kalophrynus eok Das and Haas, 2003
- Kalophrynus heterochirus Boulenger, 1900
- Kalophrynus intermedius Inger, 1966
- Kalophrynus meizon Zug, 2015
- Kalophrynus minusculus Iskandar, 1998
- Kalophrynus pleurostigma Tschudi, 1838
- Kalophrynus punctatus Peters, 1871
- Kalophrynus subterrestris Inger, 1966
- Subfamily: Microhylinae Günther, 1858 (1843)
- Genus: Glyphoglossus Gunther, 1869 "1868"
- Glyphoglossus brooksii (Boulenger, 1904)
- Glyphoglossus capsus (Das, Min, Hsu, Hertwig, and Haas, 2014)
- Glyphoglossus volzi (Van Kampen, 1905)
- Genus: Kaloula Gray, 1831
- Kaloula baleata (Müller, 1836)
- Kaloula pulchra Gray, 1831
- Genus: Metaphrynella Parker, 1934
- Metaphrynella sundana (Peters, 1867)
- Genus: Microhyla Tschudi, 1838
- Microhyla achatina Tschudi, 1838
- Microhyla berdmorei (Blyth, 1856)
- Microhyla borneensis Parker, 1928
- Microhyla heymonsi Vogt, 1911
- Microhyla malang Matsui, 2011
- Microhyla orientalis Matsui, Hamidy, and Eto, 2013
- Microhyla palmipes Boulenger, 1897
- Microhyla perparva Inger and Frogner, 1979
- Microhyla petrigena Inger and Frogner, 1979
- Microhyla superciliaris Parker, 1928
- Genus: Micryletta Dubois, 1987
- Micryletta inornata (Boulenger, 1890)
- Genus: Phrynella Boulenger, 1887
- Phrynella pulchra Boulenger, 1887
Superfamily: Myobatrachoidea
- Family: Limnodynastidae Lynch, 1969
- Genus: Lechriodus Boulenger, 1882
- Lechriodus aganoposis Zweifel, 1972
- Lechriodus melanopyga (Doria, 1875)
- Lechriodus platyceps Parker, 1940
- Genus: Limnodynastes Fitzinger, 1843
- Limnodynastes convexiusculus (Macleay, 1878)
- Family: Myobatrachidae Schlegel, 1850
- Genus: Crinia Tschudi, 1838
- Crinia remota (Tyler and Parker, 1974)
- Genus: Uperoleia Gray, 1841
- Uperoleia lithomoda Tyler, Davies, and Martin, 1981
- Uperoleia mimula Davies, McDonald, and Corben, 1986
- Subfamily: Litoriinae Dubois and Frétey, 2016
- Genus: Litoria Tschudi, 1838
- Litoria amboinensis (Horst, 1883)
- Litoria angiana (Boulenger, 1915)
- Litoria arfakiana (Peters and Doria, 1878)
- Litoria biakensis Günther, 2006
- Litoria capitula (Tyler, 1968)
- Litoria chloronota (Boulenger, 1911)
- Litoria christianbergmanni Günther, 2008
- Litoria congenita (Peters and Doria, 1878)
- Litoria darlingtoni (Loveridge, 1945)
- Litoria dorsalis Macleay, 1878
- Litoria eurynastes Menzies, Richards, and Tyler, 2008
- Litoria everetti (Boulenger, 1897)
- Litoria gasconi Richards, Oliver, Krey, and Tjaturadi, 2009
- Litoria havina Menzies, 1993
- Litoria humboldtorum Günther, 2006
- Litoria iris (Tyler, 1962)
- Litoria lodesdema Menzies, Richards, and Tyler, 2008
- Litoria longicrus (Boulenger, 1911)
- Litoria mareku Günther, 2008
- Litoria megalops Richards and Iskandar, 2006
- Litoria micromembrana (Tyler, 1963)
- Litoria modica (Tyler, 1968)
- Litoria mucro Menzies, 1993
- Litoria mystax (Van Kampen, 1906)
- Litoria nasuta (Gray, 1842)
- Litoria nigrofrenata (Günther, 1867)
- Litoria nigropunctata (Meyer, 1875)
- Litoria pygmaea (Meyer, 1875)
- Litoria quadrilineata Tyler and Parker, 1974
- Litoria rothii (De Vis, 1884)
- Litoria rubella (Gray, 1842)
- Litoria scabra Günther and Richards, 2005
- Litoria thesaurensis (Peters, 1877)
- Litoria timida Tyler and Parker, 1972
- Litoria umarensis Günther, 2004
- Litoria umbonata Tyler and Davies, 1983
- Litoria verae Günther, 2004
- Litoria viranula Menzies, Richards, and Tyler, 2008
- Litoria vocivincens Menzies, 1972
- Litoria wapogaensis Richards and Iskandar, 2001
- Litoria wisselensis (Tyler, 1968)
- Litoria wollastoni (Boulenger, 1914)
- Subfamily: Pelodryadinae Günther, 1858
- Genus: Nyctimystes Stejneger, 1916
- Nyctimystes fluviatilis Zweifel, 1958
- Nyctimystes granti (Boulenger, 1914)
- Nyctimystes humeralis (Boulenger, 1912)
- Nyctimystes infrafrenatus (Günther, 1867)
- Nyctimystes montanus (Peters and Doria, 1878)
- Nyctimystes narinosus Zweifel, 1958
- Nyctimystes pulcher (Wandolleck, 1911)
- Nyctimystes purpureolatus (Oliver, Richards, Tjaturadi, and Iskandar, 2007)
- Nyctimystes sanguinolenta (Van Kampen, 1909)
- Genus: Ranoidea Tschudi, 1838
- "Ranoidea papua" (Van Kampen, 1909)
- Ranoidea aruensis (Horst, 1883)
- Ranoidea brongersmai (Loveridge, 1945)
- Ranoidea caerulea (White, 1790)
- Ranoidea dahlii (Boulenger, 1896)
- Ranoidea dorsivena (Tyler, 1968)
- Ranoidea elkeae (Günther and Richards, 2000)
- Ranoidea eucnemis (Lönnberg, 1900)
- Ranoidea fuscula (Oliver and Richards, 2007)
- Ranoidea genimaculata (Horst, 1883)
- Ranoidea graminea (Boulenger, 1905)
- Ranoidea macki (Richards, 2001)
- Ranoidea napaea (Tyler, 1968)
- Ranoidea pratti (Boulenger, 1911)
- Ranoidea rara (Günther and Richards, 2005)
- Ranoidea rivicola (Günther and Richards, 2005)
- Ranoidea rueppelli (Boettger, 1895)
- Family: Pipidae Gray, 1825
- Genus: Xenopus Wagler, 1827
- Xenopus laevis (Daudin, 1802)
- Family: Ranidae Batsch, 1796
- "Hylarana" celebensis (Peters, 1872)
- "Hylarana" persimilis (Van Kampen, 1923)
- Genus: Abavorana Oliver, Prendini, Kraus, and Raxworthy, 2015
- Abavorana luctuosa (Peters, 1871)
- Genus: Amnirana Dubois, 1992
- Amnirana nicobariensis (Stoliczka, 1870)
- Genus: Chalcorana Dubois, 1992
- Chalcorana chalconota (Schlegel, 1837)
- Chalcorana macrops (Boulenger, 1897)
- Chalcorana megalonesa (Inger, Stuart, and Iskandar, 2009)
- Chalcorana mocquardi (Werner, 1901)
- Chalcorana parvaccola (Inger, Stuart, and Iskandar, 2009)
- Chalcorana raniceps (Peters, 1871)
- Chalcorana rufipes (Inger, Stuart, and Iskandar, 2009)
- Genus: Huia Yang, 1991
- Huia cavitympanum (Boulenger, 1893)
- Huia masonii (Boulenger, 1884)
- Huia modiglianii (Doria, Salvidio, and Tavano, 1999)
- Huia sumatrana Yang, 1991
- Genus: Hylarana Tschudi, 1838
- Hylarana erythraea (Schlegel, 1837)
- Genus: Lithobates Fitzinger, 1843
- Lithobates catesbeianus (Shaw, 1802)
- Genus: Meristogenys Yang, 1991
- Meristogenys amoropalamus (Matsui, 1986)
- Meristogenys kinabaluensis (Inger, 1966)
- Meristogenys orphnocnemis (Matsui, 1986)
- Meristogenys phaeomerus (Inger and Gritis, 1983)
- Meristogenys poecilus (Inger and Gritis, 1983)
- Meristogenys whiteheadi (Boulenger, 1887)
- Genus: Odorrana Fei, Ye, and Huang, 1990
- Odorrana hosii (Boulenger, 1891)
- Genus: Papurana Dubois, 1992
- Papurana arfaki (Meyer, 1875)
- Papurana aurata (Günther, 2003)
- Papurana daemeli (Steindachner, 1868)
- Papurana elberti (Roux, 1911)
- Papurana florensis (Boulenger, 1897)
- Papurana garritor (Menzies, 1987)
- Papurana grisea (Van Kampen, 1913)
- Papurana jimiensis (Tyler, 1963)
- Papurana moluccana (Boettger, 1895)
- Papurana novaeguineae (Van Kampen, 1909)
- Papurana papua (Lesson, 1829)
- Papurana supragrisea (Menzies, 1987)
- Papurana volkerjane (Günther, 2003)
- Genus: Pulchrana Dubois, 1992
- Pulchrana baramica (Boettger, 1900)
- Pulchrana debussyi (Van Kampen, 1910)
- Pulchrana glandulosa (Boulenger, 1882)
- Pulchrana laterimaculata (Barbour and Noble, 1916)
- Pulchrana picturata (Boulenger, 1920)
- Pulchrana rawa (Matsui, Mumpuni, and Hamidy, 2012)
- Pulchrana siberu (Dring, McCarthy, and Whitten, 1990)
- Pulchrana signata (Günther, 1872)
- Genus: Sanguirana Dubois, 1992
- Sanguirana sanguinea (Boettger, 1893)
- Genus: Staurois Cope, 1865
- Staurois guttatus (Günther, 1858)
- Staurois latopalmatus (Boulenger, 1887)
- Staurois tuberilinguis Boulenger, 1918
- Genus: Sumaterana Arifin, Smart, Hertwig, Smith, Iskandar, and Haas, 2018
- Sumaterana crassiovis (Boulenger, 1920)
- Sumaterana dabulescens Arifin, Smart, Hertwig, Smith, Iskandar, and Haas, 2018
- Sumaterana montana Arifin, Smart, Hertwig, Smith, Iskandar, and Haas, 2018
- Family: Rhacophoridae Hoffman, 1932 (1858)
- Subfamily: Rhacophorinae Hoffman, 1932 (1858)
- Genus: Chiromantis Peters, 1854
- Chiromantis baladika Riyanto and Kurniati, 2014
- Chiromantis nauli Riyanto and Kurniati, 2014
- Chiromantis trilaksonoi Riyanto and Kurniati, 2014
- Chiromantis vittiger (Boulenger, 1897)
- Genus: Feihyla Frost, Grant, Faivovich, Bain, Haas, Haddad, de Sá, Channing, Wilkinson, Donnellan, Raxworthy, Campbell, Blotto, Moler, Drewes, Nussbaum, Lynch, Green, and Wheeler, 2006
- Feihyla kajau (Dring, 1983)
- Genus: Kurixalus Ye, Fei, and Dubois, 1999
- Kurixalus appendiculatus (Günther, 1858)
- Genus: Nyctixalus Boulenger, 1882
- Nyctixalus margaritifer (Boulenger, 1882)
- Nyctixalus pictus (Peters, 1871)
- Genus: Philautus Gistel, 1848
- Philautus amabilis Wostl, Riyanto, Hamidy, Kurniawan, Smith, and Harvey, 2017
- Philautus aurifasciatus (Schlegel, 1837)
- Philautus cornutus (Boulenger, 1920)
- Philautus erythrophthalmus Stuebing and Wong, 2000
- Philautus hosii (Boulenger, 1895)
- Philautus ingeri Dring, 1987
- Philautus jacobsoni (Van Kampen, 1912)
- Philautus kerangae Dring, 1987
- Philautus larutensis (Boulenger, 1900)
- Philautus longicrus (Boulenger, 1894)
- Philautus macroscelis (Boulenger, 1896)
- Philautus mjobergi Smith, 1925
- Philautus pallidipes (Barbour, 1908)
- Philautus petersi (Boulenger, 1900)
- Philautus polymorphus Wostl, Riyanto, Hamidy, Kurniawan, Smith, and Harvey, 2017
- Philautus refugii Inger and Stuebing, 1996
- Philautus tectus Dring, 1987
- Philautus thamyridion Wostl, Riyanto, Hamidy, Kurniawan, Smith, and Harvey, 2017
- Philautus ventrimaculatus Wostl, Riyanto, Hamidy, Kurniawan, Smith, and Harvey, 2017
- Genus: Polypedates Tschudi, 1838
- Polypedates colletti (Boulenger, 1890)
- Polypedates iskandari Riyanto, Mumpuni, and McGuire, 2011
- Polypedates leucomystax (Gravenhorst, 1829)
- Polypedates macrotis (Boulenger, 1891)
- Polypedates mutus (Smith, 1940)
- Polypedates otilophus (Boulenger, 1893)
- Polypedates pseudotilophus Matsui, Hamidy, and Kuraishi, 2014
- Genus: Rhacophorus Kuhl and Van Hasselt, 1822
- Rhacophorus achantharrhena Harvey, Pemberton, and Smith, 2002
- Rhacophorus angulirostris Ahl, 1927
- Rhacophorus barisani Harvey, Pemberton, and Smith, 2002
- Rhacophorus bengkuluensis Streicher, Hamidy, Harvey, Anders, Shaney, Kurniawan, and Smith, 2014
- Rhacophorus bifasciatus Van Kampen, 1923
- Rhacophorus catamitus Harvey, Pemberton, and Smith, 2002
- Rhacophorus cyanopunctatus Manthey and Steiof, 1998
- Rhacophorus dulitensis Boulenger, 1892
- Rhacophorus edentulus Müller, 1894
- Rhacophorus fasciatus Boulenger, 1895
- Rhacophorus gauni (Inger, 1966)
- Rhacophorus georgii Roux, 1904
- Rhacophorus harrissoni Inger and Haile, 1959
- Rhacophorus indonesiensis Hamidy and Kurniati, 2015
- Rhacophorus margaritifer (Schlegel, 1837)
- Rhacophorus modestus Boulenger, 1920
- Rhacophorus monticola Boulenger, 1896
- Rhacophorus nigropalmatus Boulenger, 1895
- Rhacophorus norhayatii Chan and Grismer, 2010
- Rhacophorus pardalis Günther, 1858
- Rhacophorus poecilonotus Boulenger, 1920
- Rhacophorus pseudacutirostris Dehling, 2011
- Rhacophorus reinwardtii (Schlegel, 1840)
- Rhacophorus rufipes Inger, 1966
- Genus: Theloderma Tschudi, 1838
- Theloderma asperum (Boulenger, 1886)
- Theloderma leporosum Tschudi, 1838
Order: Gymnophiona
- Family: Ichthyophiidae Taylor, 1968
- Genus: Ichthyophis Fitzinger, 1826
- Ichthyophis bernisi Salvador, 1975
- Ichthyophis billitonensis Taylor, 1965
- Ichthyophis elongatus Taylor, 1965
- Ichthyophis humphreyi Taylor, 1973
- Ichthyophis hypocyaneus (Boie, 1827)
- Ichthyophis javanicus Taylor, 1960
- Ichthyophis monochrous (Bleeker, 1858)
- Ichthyophis nigroflavus Taylor, 1960
- Ichthyophis paucidentulus Taylor, 1960
- Ichthyophis paucisulcus Taylor, 1960
- Ichthyophis sumatranus Taylor, 1960
References