Khanaqa (), also known as Khanaqah, KhÃÂnaqÃÂh, or KhÃÂneqÃÂh, is a village in Arghanj Khwa district, Badakhshan province, northeastern Afghanistan.
The Köppen climate classification classifies Khanaqa's climate as a warm, dry-summer continental climate (Köppen: Dsb), meaning that it experiences dry summers, and gets less than of precipitation during the driest month.
Approximately away from Khanaqa is another village in Arghanj Khwa district known as Tagabak.