Eugene Goodilin (; born 18 November 1969) is a Russian chemist and material scientist.
In 2006 was elected in the Russian Academy of Science and became the youngest corresponding member.
In 2015, a group of researchers from Lomonosov Moscow State University under the direction of Goodilin developed a unique method of performing nondestructive analysis of the electron transport chain in living mitochondria, using surface-enhanced Raman spectroscopy. Their work in this area was published in the journal Scientific Reports.