This article is one of a series providing information about endemism among birds in the world's various zoogeographic zones. For an overview of this subject see Endemism in birds.
Japan has no endemic families. It has one endemic genus: Apalopteron, which contains the Bonin white-eye. The extinct Bonin grosbeak was formerly considered the only member of the genus Chaunoproctus, but taxonomic analysis supports it as being a basal member of the rosefinch genus Carpodacus.
Birdlife International has defined the following Endemic Bird Areas (EBAs) in Japan:
The following have been designated as secondary areas:
The following is a list of bird species endemic to Japan: