Bowen Creek is a stream in Phelps, Crawford and Gasconade counties in the U.S. state of Missouri. It is a tributary of Bourbeuse River.
The stream headwaters arise in Crawford County adjacent to the Crawford-Phelps county line at and the stream flows north along and crossing the county line several times before crossing into Gasconade County to its confluence with the Bourbeuse River at . The confluence is 1.5 mile west of Jake Prairie and two miles southeast of Redbird.
Bowen Creek has the name of Colonel Isaiah Bowen, the proprietor of a local watermill.