Andrew Thomson (born 30 December 1972) is a former Australian rules footballer who played with the Sydney Swans in the Australian Football League (AFL).
Thomson was a rover, recruited to Sydney from Goulburn Valley Football League club Echuca. He made two senior appearances in the 1993 AFL season, against the Brisbane Bears in round eight and Geelong in round nine. He was the Sydney Swans Reserves Best and Fairest in 1992