The 2025 Florida Atlantic Owls baseball team represented Florida Atlantic University in the sport of baseball during the 2025 college baseball season. The Owls competed as members of the American Athletic Conference (AAC). Home games were played at FAU Baseball Stadium on the university's main campus in Boca Raton, Florida. The team was coached by John McCormack, who was in his 17th season as Florida Atlantic's head coach.
The American Athletic Conference preseason poll was released on December 18, 2024, with the Owls predicted to finish in sixth place.
<nowiki>*</nowiki>Rankings are based on the team's current ranking in the D1Baseball poll.