The 2016 Liga Premier (), also known as the 100PLUS Liga Premier for sponsorship reasons, was the 13th season of the Liga Premier, the second-tier professional football league in Malaysia.
The season was held from 12 February and concluded on 22 October 2016.
The Liga Premier champions for 2016 season was Melaka United. The champions and runners-up were both promoted to 2017 Liga Super.
The following teams have changed division since the 2015 season.
Promoted from Liga FAM
Relegated from Liga Super
Promoted to Liga Super
Relegated to Liga FAM
<small>Note: Flags indicate national team as has been defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.</small>
<small>Note: Flags indicate national team as has been defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.</small>
<small>Note: Players name in bold indicates the player is registered during the mid-season transfer window.</small>
<onlyinclude></onlyinclude>
<small>source: Sistem Pengurusan Maklumat Bolasepak </small>
<sup>4</sup> Player scored 4 goals