The 2016 Kyrgyzstan Cup was the 25th season of the Kyrgyzstan Cup knockout tournament. The cup winner qualified for the 2017 AFC Cup.
[Jul 6] Ala-Too 0-3 Abdish-Ata-2 [Aug 3] Alay 2-1 Abdish-Ata Alga 2-4 Dordoy Aldier 1-1 Alay-2 [3-5 pen]
First Legs [Aug 7] Alay-2 0-6 Alay [Aug 9] Dordoy 5-0 Abdish-Ata-2
Second Legs [Aug 14] Alay 4-0 Alay-2 Abdish-Ata-2 2-3 Dordoy
[Sep 18] Dordoy 1-0 Alay [David Tetteh 60]