The 2006 Ukrainian Amateur Cup was the eleventh annual season of Ukraine's football knockout competition for amateur football teams. The competition started on 22 July 2006 and concluded on 8 October 2006.
The cup holders Pivdenstal Yenakieve did not enter.
In bold are clubs that were active at the same season AAFU championship (parallel round-robin competition).
The following is the bracket that demonstrates the last four rounds of the Ukrainian Cup, including the final match. Numbers in parentheses next to the match score represent the results of a penalty shoot-out.
This year ODEK Orzhiv started from the quarterfinals. All the other teams started from the 1/8 finals.