The 2003 Meistriliiga was the 13th season of the Meistriliiga, the top Estonian league for association football clubs, since its establishment in 1992.
Flora won their 7th Meistriliiga title.
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Valga won 5âÂÂ2 on aggregate and retained their Meistriliiga spot for the 2004 season.
Each team played every opponent four times, twice at home and twice on the road, for a total of 36 games.