1998 Emperor's Cup Final was the 78th final of the Emperor's Cup competition. The final was played at National Stadium in Tokyo on January 1, 1999. Yokohama Flügels won the championship.
Yokohama Flügels won their 2nd title, by defeating Shimizu S-Pulse 2âÂÂ1 with goals from Yoshikiyo Kuboyama and Takayuki Yoshida. This would be the Yokohama Flugels' last ever game, before being merged with the Yokohama Marinos to become the modern day Yokohama F Marinos.