The 1996 Conference USA baseball tournament was the 1996 postseason college baseball championship of the NCAA Division I Conference USA, held at Pete Taylor Park in Hattiesburg, Mississippi, from May 14 through 19. won the tournament and received Conference USA's automatic bid to the 1996 NCAA Division I baseball tournament. The tournament consisted of nine teams with a play-in game, two double-elimination brackets, and a single-game final.
The two teams with the worst records in regular season conference play faced each other in a single elimination situation to earn the 8th spot in the conference tournament.